.. _fastStructure:

fastStructure
=============

De acordo com a `página do fastStructure <https://rajanil.github.io/fastStructure/>`_,
"*fastStructure is an algorithm for inferring population structure from large
SNP genotype data. It is based on a variational Bayesian framework for
posterior inference and is written in Python2.x. Here, we summarize how to
setup this software package, compile the C and Cython scripts and run the
algorithm on a test simulated genotype dataset*".

Versões disponíveis
-------------------

* fastStructure/1.0


Submissão de Jobs em Serial
---------------------------

Crie um arquivo chamado, por exemplo, *submit_serial_jobs.sh*.

.. code-block:: bash

   #!/bin/bash
   #SBATCH -t 24:00:00

   export INPUT="testdata"
   export OUTPUT="*"

   module load fastStructure/1.0
   job-nanny python structure.py -K 3 --input=testdata --output=testoutput_simple --full --seed=100

Para submeter o processo, basta usar o comando:

.. code-block:: bash

   sbatch submit_serial_jobs.sh


Referências
-----------

Para informações adicionais sobre o software, consulte a `página do fastStructure <https://rajanil.github.io/fastStructure/>`_.