fastStructure

De acordo com a página do fastStructure, “fastStructure is an algorithm for inferring population structure from large SNP genotype data. It is based on a variational Bayesian framework for posterior inference and is written in Python2.x. Here, we summarize how to setup this software package, compile the C and Cython scripts and run the algorithm on a test simulated genotype dataset”.

Versões disponíveis

fastStructure/1.0

Submissão de Jobs em Serial

Crie um arquivo chamado, por exemplo, submit_serial_jobs.sh.

#!/bin/bash
#SBATCH -t 24:00:00

export INPUT="testdata"
export OUTPUT="*"

module load fastStructure/1.0
job-nanny python structure.py -K 3 --input=testdata --output=testoutput_simple --full --seed=100

Para submeter o processo, basta usar o comando:

sbatch submit_serial_jobs.sh

Referências

Para informações adicionais sobre o software, consulte a página do fastStructure.